HL_8RDW_029

3D structure

PDB id

8RDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon and EF-Tu(GDP) (structure 3).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.74 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

8RDW|1|Z2|A|1054

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RDW_029 not in the Motif Atlas

Homologous match to HL_6PRV_001

Geometric discrepancy: 0.1381

The information below is about HL_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20174.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8RDW|1|Z2|C|1048
8RDW|1|Z2|U|1049
8RDW|1|Z2|U|1050
8RDW|1|Z2|A|1051
8RDW|1|Z2|G|1052
8RDW|1|Z2|A|1053
8RDW|1|Z2|A|1054
8RDW|1|Z2|G|1055
8RDW|1|Z2|C|1056
8RDW|1|Z2|A|1057
8RDW|1|Z2|G|1058

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain B

Methyl-accepting chemotaxis protein

Chain Lg

Large ribosomal subunit protein uL16