HL_8RDW_046

3D structure

PDB id

8RDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon and EF-Tu(GDP) (structure 3).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.74 Å

Loop

Sequence

UUUAUUAAAAA

Length

11 nucleotides

Bulged bases

8RDW|1|Z2|A|1766, 8RDW|1|Z2|U|1767, 8RDW|1|Z2|U|1768, 8RDW|1|Z2|A|1772

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RDW_046 not in the Motif Atlas

Homologous match to HL_5J7L_178

Geometric discrepancy: 0.062

The information below is about HL_5J7L_178

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01962.2

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

8RDW|1|Z2|U|1763
8RDW|1|Z2|U|1764
8RDW|1|Z2|U|1765
8RDW|1|Z2|A|1766
8RDW|1|Z2|U|1767
8RDW|1|Z2|U|1768
8RDW|1|Z2|A|1769
8RDW|1|Z2|A|1770
8RDW|1|Z2|A|1771
8RDW|1|Z2|A|1772
8RDW|1|Z2|A|1773

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain Ba

Large ribosomal subunit protein bL34

Chain Cl

Large ribosomal subunit protein uL2