HL_8RDW_055
3D structure
- PDB id
- 8RDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon and EF-Tu(GDP) (structure 3).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.74 Å
Loop
- Sequence
- CUAAAGAGUAACG
- Length
- 13 nucleotides
- Bulged bases
- 8RDW|1|Z2|A|2251, 8RDW|1|Z2|C|2258
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8RDW_055 not in the Motif Atlas
- Homologous match to HL_5J7L_187
- Geometric discrepancy: 0.077
- The information below is about HL_5J7L_187
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_91939.2
- Basepair signature
- cWW-tSH-tHH-tWW-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
8RDW|1|Z2|C|2247
8RDW|1|Z2|U|2248
8RDW|1|Z2|A|2249
8RDW|1|Z2|A|2250
8RDW|1|Z2|A|2251
8RDW|1|Z2|G|2252
8RDW|1|Z2|A|2253
8RDW|1|Z2|G|2254
8RDW|1|Z2|U|2255
8RDW|1|Z2|A|2256
8RDW|1|Z2|A|2257
8RDW|1|Z2|C|2258
8RDW|1|Z2|G|2259
Current chains
- Chain Z2
- 23S rRNA
Nearby chains
- Chain Lg
- Large ribosomal subunit protein uL16
- Chain VH
- Large ribosomal subunit protein bL27
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