HL_8RDW_058

3D structure

PDB id

8RDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon and EF-Tu(GDP) (structure 3).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.74 Å

Loop

Sequence

CCCACAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RDW_058 not in the Motif Atlas

Homologous match to HL_4WF9_053

Geometric discrepancy: 0.1074

The information below is about HL_4WF9_053

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8RDW|1|Z2|C|2338
8RDW|1|Z2|C|2339
8RDW|1|Z2|C|2340
8RDW|1|Z2|A|2341
8RDW|1|Z2|C|2342
8RDW|1|Z2|A|2343
8RDW|1|Z2|A|2344
8RDW|1|Z2|G|2345

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain Kd

Large ribosomal subunit protein uL15

Chain VH

Large ribosomal subunit protein bL27

Chain dh

Large ribosomal subunit protein bL35