HL_8RDW_088

3D structure

PDB id

8RDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon and EF-Tu(GDP) (structure 3).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.74 Å

Loop

Sequence

GAUGCAACGC

Length

10 nucleotides

Bulged bases

8RDW|1|iN|G|1015

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RDW_088 not in the Motif Atlas

Homologous match to HL_4LFB_021

Geometric discrepancy: 0.0967

The information below is about HL_4LFB_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_97521.2

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8RDW|1|iN|G|1007
8RDW|1|iN|A|1008
8RDW|1|iN|U|1009
8RDW|1|iN|G|1010
8RDW|1|iN|C|1011
8RDW|1|iN|A|1012
8RDW|1|iN|A|1013
8RDW|1|iN|C|1014
8RDW|1|iN|G|1015
8RDW|1|iN|C|1016

Current chains

Chain iN

16S rRNA

Nearby chains

Chain F

Small ribosomal subunit protein uS9

Chain JY

Small ribosomal subunit protein uS10