HL_8RJB_014

3D structure

PDB id

8RJB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-RAMP4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69243 Å

Loop

Sequence

CGAGACCCG

Length

9 nucleotides

Bulged bases

8RJB|1|K|C|967

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RJB_014 not in the Motif Atlas

Geometric match to HL_2OEU_002

Geometric discrepancy: 0.3811

The information below is about HL_2OEU_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02817.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8RJB|1|K|C|962
8RJB|1|K|G|963
8RJB|1|K|A|964
8RJB|1|K|G|965
8RJB|1|K|A|966
8RJB|1|K|C|967
8RJB|1|K|C|968
8RJB|1|K|C|969
8RJB|1|K|G|970

Current chains

Chain K

28S rRNA

Nearby chains

Chain C

Large ribosomal subunit protein uL4

Chain E

60S ribosomal protein L6

Chain F

Ribosomal Protein uL30