HL_8RJB_015

3D structure

PDB id

8RJB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-RAMP4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69243 Å

Loop

Sequence

GUCC

Length

4 nucleotides

Bulged bases

8RJB|1|K|U|1179

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RJB_015 not in the Motif Atlas

Geometric match to HL_8P9A_134

Geometric discrepancy: 0.3262

The information below is about HL_8P9A_134

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27530.1

Basepair signature

cWW-F-F

Number of instances in this motif group

10

Unit IDs

8RJB|1|K|G|1178
8RJB|1|K|U|1179
8RJB|1|K|C|1180
8RJB|1|K|C|1183

Current chains

Chain K

28S rRNA

Nearby chains

Chain D

Ribosomal_L18_c domain-containing protein

Chain I

60S ribosomal protein L10

Chain u

5S ribosomal RNA; 5S rRNA