HL_8RJB_026

3D structure

PDB id

8RJB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-RAMP4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69243 Å

Loop

Sequence

CGAAACG

Length

7 nucleotides

Bulged bases

8RJB|1|K|A|1765, 8RJB|1|K|C|1768

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RJB_026 not in the Motif Atlas

Homologous match to HL_8P9A_232

Geometric discrepancy: 0.5849

The information below is about HL_8P9A_232

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

8RJB|1|K|C|1763
8RJB|1|K|G|1764
8RJB|1|K|A|1765
8RJB|1|K|A|1766
8RJB|1|K|A|1767
8RJB|1|K|C|1768
8RJB|1|K|G|1769

Current chains

Chain K

28S rRNA

Nearby chains