HL_8RJB_029

3D structure

PDB id

8RJB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-RAMP4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69243 Å

Loop

Sequence

GGAUGAAC

Length

8 nucleotides

Bulged bases

8RJB|1|K|A|1891, 8RJB|1|K|A|1892

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RJB_029 not in the Motif Atlas

Homologous match to HL_5TBW_026

Geometric discrepancy: 0.0813

The information below is about HL_5TBW_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_44398.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8RJB|1|K|G|1886
8RJB|1|K|G|1887
8RJB|1|K|A|1888
8RJB|1|K|U|1889
8RJB|1|K|G|1890
8RJB|1|K|A|1891
8RJB|1|K|A|1892
8RJB|1|K|C|1893

Current chains

Chain K

28S rRNA

Nearby chains

Chain F

Ribosomal Protein uL30

Chain e

Ribosomal protein L32

Chain f

60S ribosomal protein L35a

Chain u

5S ribosomal RNA; 5S rRNA