HL_8RJB_055

3D structure

PDB id

8RJB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-RAMP4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69243 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

8RJB|1|K|A|3876, 8RJB|1|K|A|3877, 8RJB|1|K|C|3878

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RJB_055 not in the Motif Atlas

Homologous match to HL_5TBW_051

Geometric discrepancy: 0.0635

The information below is about HL_5TBW_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

8RJB|1|K|G|3873
8RJB|1|K|G|3874
8RJB|1|K|G|3875
8RJB|1|K|A|3876
8RJB|1|K|A|3877
8RJB|1|K|C|3878
8RJB|1|K|G|3879
8RJB|1|K|G|3880
8RJB|1|K|G|3881
8RJB|1|K|C|3882

Current chains

Chain K

28S rRNA

Nearby chains

Chain e

Ribosomal protein L32

Chain w

Ribosomal protein L3