HL_8RJB_064

3D structure

PDB id

8RJB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-RAMP4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69243 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

8RJB|1|K|G|4475

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RJB_064 not in the Motif Atlas

Homologous match to HL_5TBW_062

Geometric discrepancy: 0.0665

The information below is about HL_5TBW_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79150.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

8RJB|1|K|A|4474
8RJB|1|K|G|4475
8RJB|1|K|C|4476
8RJB|1|K|A|4477
8RJB|1|K|G|4478
8RJB|1|K|A|4479
8RJB|1|K|A|4480
8RJB|1|K|U|4481

Current chains

Chain K

28S rRNA

Nearby chains

Chain H

60S ribosomal protein L9

Chain m

eL40