HL_8RJB_068

3D structure

PDB id

8RJB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-RAMP4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69243 Å

Loop

Sequence

UGAGGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RJB_068 not in the Motif Atlas

Homologous match to HL_8C3A_067

Geometric discrepancy: 0.123

The information below is about HL_8C3A_067

Detailed Annotation

Ribsomal LSU H95

Broad Annotation

Ribsomal LSU H95

Motif group

HL_65794.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

11

Unit IDs

8RJB|1|K|U|4646
8RJB|1|K|G|4647
8RJB|1|K|A|4648
8RJB|1|K|G|4649
8RJB|1|K|G|4650
8RJB|1|K|A|4651

Current chains

Chain K

28S rRNA

Nearby chains

Chain R

Ribosomal protein L19

Chain U

Ribosomal protein L22

Chain d

60S ribosomal protein L31