HL_8RJC_031

3D structure

PDB id

8RJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.90061 Å

Loop

Sequence

GUGUAACAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RJC_031 not in the Motif Atlas

Homologous match to HL_5TBW_028

Geometric discrepancy: 0.5327

The information below is about HL_5TBW_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

8RJC|1|K|G|2005
8RJC|1|K|U|2006
8RJC|1|K|G|2007
8RJC|1|K|U|2008
8RJC|1|K|A|2009
8RJC|1|K|A|2010
8RJC|1|K|C|2011
8RJC|1|K|A|2012
8RJC|1|K|A|2013
8RJC|1|K|C|2014

Current chains

Chain K

28S rRNA

Nearby chains

Chain m

eL40