8RJC Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_8RJC_001 | 1/K/37:44 | No text annotation | geometric HL_4WF9_006 HL_30068.2 | |
| HL_8RJC_002 | 1/K/68:73 | No text annotation | homologous HL_8C3A_002 NA | |
| HL_8RJC_003 | 1/K/89:95 | No text annotation | homologous HL_5TBW_003 NA | |
| HL_8RJC_004 | 1/K/131:137 | No text annotation | homologous HL_8C3A_004 NA | |
| HL_8RJC_005 | 1/K/204:211 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_005 NA | |
| HL_8RJC_006 | 1/K/222:226 | No text annotation | homologous HL_5TBW_006 NA | |
| HL_8RJC_007 | 1/K/230:238 | T-loop with unstacked turn | homologous HL_8C3A_007 NA | |
| HL_8RJC_008 | 1/K/289:298 | No text annotation | homologous HL_8C3A_008 NA | |
| HL_8RJC_009 | 1/K/314:323 | Pseudoknot geometry | homologous HL_8C3A_009 NA | |
| HL_8RJC_010 | 1/K/368:373 | GNRA | homologous HL_8C3A_010 NA | |
| HL_8RJC_011 | 1/K/393:398 | GNRA | homologous HL_8C3A_011 NA | |
| HL_8RJC_012 | 1/K/520:641 | No text annotation | ||
| HL_8RJC_013 | 1/K/759:904 | No text annotation | geometric HL_4V9F_003 HL_75660.5 | |
| HL_8RJC_014 | 1/K/962:970 | No text annotation | geometric HL_5XUZ_001 HL_69752.2 | |
| HL_8RJC_015 | 1/K/1178:1183 | No text annotation | geometric HL_8P9A_134 HL_70782.2 | |
| HL_8RJC_016 | 1/K/1317:1326 | T-loop with 2 stacked bulged bases | homologous HL_5TBW_014 NA | |
| HL_8RJC_083 | 1/K/1364:1373 | No text annotation | ||
| HL_8RJC_018 | 1/K/1389:1394 | GNRA | homologous HL_8C3A_016 NA | |
| HL_8RJC_019 | 1/K/1406B:1411A | No text annotation | geometric HL_2ZZM_002 HL_13963.3 | |
| HL_8RJC_020 | 1/K/1436:1448 | Pseudoknot geometry | geometric HL_1ZCI_002 HL_94376.1 | |
| HL_8RJC_021 | 1/K/1480:1484 | Mini UNCG with extended bulge | geometric HL_7A0S_017 HL_48778.2 | |
| HL_8RJC_022 | 1/K/1561:1566 | GNRA | homologous HL_5TBW_019 NA | |
| HL_8RJC_023 | 1/K/1593:1602 | No text annotation | homologous HL_5TBW_020 NA | |
| HL_8RJC_024 | 1/K/1627:1635 | No text annotation | homologous HL_8C3A_021 NA | |
| HL_8RJC_025 | 1/K/1675:1680 | Externally structured | homologous HL_8C3A_022 NA | |
| HL_8RJC_026 | 1/K/1763:1769 | No text annotation | ||
| HL_8RJC_027 | 1/K/1816:1823 | No text annotation | homologous HL_5TBW_024 NA | |
| HL_8RJC_028 | 1/K/1864:1870 | GNRA | homologous HL_8C3A_025 NA | |
| HL_8RJC_029 | 1/K/1886:1893 | No text annotation | homologous HL_8C3A_026 NA | |
| HL_8RJC_030 | 1/K/1978:1989 | No text annotation | ||
| HL_8RJC_031 | 1/K/2005:2014 | No text annotation | homologous HL_5TBW_028 NA | |
| HL_8RJC_032 | 1/K/2087:2270 | No text annotation | ||
| HL_8RJC_033 | 1/K/2317:2322 | GNRA | homologous HL_8C3A_030 NA | |
| HL_8RJC_034 | 1/K/2376:2384 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_031 NA | |
| HL_8RJC_035 | 1/K/2420:2426 | Pseudoknot geometry with 3' bulge | homologous HL_5TBW_032 NA | |
| HL_8RJC_036 | 1/K/2458:2463 | GNRA variation | homologous HL_5TBW_033 NA | |
| HL_8RJC_037 | 1/K/2487:2491 | Mini UNCG | geometric HL_4LFB_005 HL_48778.2 | |
| HL_8RJC_038 | 1/K/2523:2532 | No text annotation | homologous HL_5TBW_035 NA | |
| HL_8RJC_039 | 1/K/2561:2566 | GNRA | geometric HL_5F9F_003 HL_37824.8 | |
| HL_8RJC_040 | 1/K/2578:2583 | GNRA | homologous HL_8C3A_036 NA | |
| HL_8RJC_041 | 1/K/2624:2632 | No text annotation | homologous HL_8C3A_037 NA | |
| HL_8RJC_042 | 1/K/2664:2670 | No text annotation | homologous HL_8C3A_038 NA | |
| HL_8RJC_043 | 1/K/2705:2710 | No text annotation | geometric HL_4V9F_003 HL_75660.5 | |
| HL_8RJC_044 | 1/K/2738:2742 | No text annotation | homologous HL_8C3A_040 NA | |
| HL_8RJC_045 | 1/K/2792:2799 | No text annotation | homologous HL_5TBW_041 NA | |
| HL_8RJC_046 | 1/K/2810:2816 | GNRA | homologous HL_5TBW_042 NA | |
| HL_8RJC_047 | 1/K/2872:2877 | UNCG | homologous HL_8C3A_043 NA | |
| HL_8RJC_048 | 1/K/2901:3598 | No text annotation | ||
| HL_8RJC_049 | 1/K/3614:3618 | No text annotation | homologous HL_8C3A_045 NA | |
| HL_8RJC_050 | 1/K/3639:3649 | No text annotation | homologous HL_5TBW_046 NA | |
| HL_8RJC_051 | 1/K/3668:3674 | GNRA | homologous HL_8C3A_047 NA | |
| HL_8RJC_052 | 1/K/3724:3729 | GNRA | homologous HL_5TBW_048 NA | |
| HL_8RJC_053 | 1/K/3757:3767 | No text annotation | homologous HL_8C3A_049 NA | |
| HL_8RJC_054 | 1/K/3796:3804 | No text annotation | homologous HL_8C3A_050 NA | |
| HL_8RJC_055 | 1/K/3873:3882 | No text annotation | homologous HL_5TBW_051 NA | |
| HL_8RJC_056 | 1/K/4193:4201 | No text annotation | homologous HL_8C3A_055 NA | |
| HL_8RJC_057 | 1/K/4210:4222 | No text annotation | homologous HL_8C3A_056 NA | |
| HL_8RJC_058 | 1/K/4250:4258 | No text annotation | homologous HL_8C3A_057 NA | |
| HL_8RJC_059 | 1/K/4270:4277 | Pseudoknot geometry | homologous HL_8C3A_058 NA | |
| HL_8RJC_060 | 1/K/4301:4309 | No text annotation | homologous HL_8C3A_059 NA | |
| HL_8RJC_061 | 1/K/4321:4326 | GNRA | homologous HL_5TBW_059 NA | |
| HL_8RJC_062 | 1/K/4352:4362 | No text annotation | geometric HL_4V83_139 NA | |
| HL_8RJC_063 | 1/K/4417:4425 | No text annotation | homologous HL_5TBW_061 NA | |
| HL_8RJC_064 | 1/K/4474:4481 | No text annotation | homologous HL_5TBW_062 NA | |
| HL_8RJC_065 | 1/K/4497:4503 | No text annotation | geometric HL_5TBW_063 NA | |
| HL_8RJC_066 | 1/K/4540:4545 | GNRA | homologous HL_8C3A_065 NA | |
| HL_8RJC_067 | 1/K/4603:4608 | GNRA | geometric HL_4V9F_066 HL_37824.8 | |
| HL_8RJC_068 | 1/K/4646:4651 | Ribsomal LSU H95 | homologous HL_8C3A_067 NA | |
| HL_8RJC_069 | 1/K/4688:4702 | No text annotation | homologous HL_8C3A_068 NA | |
| HL_8RJC_070 | 1/K/4776:4859 | No text annotation | geometric HL_5NFV_001 HL_69752.2 | |
| HL_8RJC_085 | 1/K/4905:4916 | No text annotation | ||
| HL_8RJC_072 | 1/K/4975:4983 | No text annotation | geometric HL_5J7L_201 HL_64690.6 | |
| HL_8RJC_073 | 1/K/5021:5028 | Mini UNCG | homologous HL_8C3A_072 NA | |
| HL_8RJC_074 | 1/q/12:23 | No text annotation | ||
| HL_8RJC_075 | 1/q/31:39 | tRNA anticodon loop | homologous HL_4V9Q_214 HL_06059.7 | |
| HL_8RJC_076 | 1/q/53:61 | T-loop with 2 stacked bulged bases | homologous HL_5HR6_003 HL_28252.9 | |
| HL_8RJC_084 | 1/u/32:45 | No text annotation | homologous HL_8C3A_228 NA | |
| HL_8RJC_077 | 1/u/36:41 | No text annotation | homologous HL_8C3A_073 NA | |
| HL_8RJC_078 | 1/u/86:91 | GNRA | homologous HL_8C3A_074 NA | |
| HL_8RJC_079 | 1/v/47:56 | Pseudoknot with intercalation | geometric HL_4V9F_001 HL_93438.2 | |
| HL_8RJC_080 | 1/v/68:90 | No text annotation | homologous HL_8C3A_075 NA | |
| HL_8RJC_081 | 1/v/107:112 | No text annotation | homologous HL_8C3A_076 NA | |
| HL_8RJC_082 | 1/v/122:128 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_8RJC_017 | No text annotation | ||
| HL_8RJC_071 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_8RJC_001 | 1/K/6:7, 1/v/149:151 | Single bulged C | geometric IL_1DQF_001 IL_61258.15 | |
| IL_8RJC_002 | 1/K/12:14, 1/v/143:144 | Single bulged U | homologous IL_8C3A_003 NA | |
| IL_8RJC_003 | 1/K/16:18, 1/v/139:141 | Isolated non-canonical cWW pair | geometric IL_1Y27_001 IL_87907.2 | |
| IL_8RJC_004 | 1/K/26:27, 1/K/55:57 | No text annotation | homologous IL_8C3A_004 NA | |
| IL_8RJC_005 | 1/K/30:37, 1/K/44:52 | 9x8 Sarcin-Ricin; G-bulge | geometric IL_4WF9_008 IL_84694.2 | |
| IL_8RJC_006 | 1/K/81:88, 1/K/96:102 | No text annotation | homologous IL_8C3A_006 NA | |
| IL_8RJC_007 | 1/K/118:121, 1/K/152:153 | Stack outside cWW | geometric IL_5J7L_268 IL_56987.1 | |
| IL_8RJC_175 | 1/K/118:122, 1/K/147:153 | No text annotation | ||
| IL_8RJC_008 | 1/K/121:122, 1/K/147:152 | No text annotation | homologous IL_8C3A_007 NA | |
| IL_8RJC_009 | 1/K/125:126, 1/K/142:144 | Single bulged C | geometric IL_1DQF_001 IL_61258.15 | |
| IL_8RJC_010 | 1/K/168:173, 1/K/263:267 | No text annotation | ||
| IL_8RJC_011 | 1/K/180:189, 1/K/252:256 | No text annotation | ||
| IL_8RJC_012 | 1/K/195:196, 1/K/244:246 | Single bulged C | geometric IL_1DQF_001 IL_61258.15 | |
| IL_8RJC_013 | 1/K/199:201, 1/K/214:215 | Single bulged U | homologous IL_8C3A_013 NA | |
| IL_8RJC_014 | 1/K/339:342, 1/v/32:33 | Minor groove platform, major groove intercalation | geometric IL_1U9S_005 IL_95583.2 | |
| IL_8RJC_015 | 1/K/348:350, 1/v/25:26 | Single bulged A | homologous IL_8C3A_014 NA | |
| IL_8RJC_016 | 1/K/387:390, 1/K/401:414 | No text annotation | homologous IL_5TBW_014 NA | |
| IL_8RJC_017 | 1/K/415:421, 1/v/13:19 | Triple sheared with non-canonical cWW | homologous IL_5TBW_015 NA | |
| IL_8RJC_018 | 1/K/443:446, 1/K/1300:1304 | No text annotation | geometric IL_4PHY_003 IL_99358.1 | |
| IL_8RJC_019 | 1/K/448:450, 1/K/1297:1298 | No text annotation | ||
| IL_8RJC_020 | 1/K/459:460, 1/K/695:697 | Single bulged C | geometric IL_1S03_002 IL_61258.15 | |
| IL_8RJC_021 | 1/K/462:464, 1/K/691:693 | Isolated non-canonical cWW pair | geometric IL_4V88_467 NA | |
| IL_8RJC_022 | 1/K/466:472, 1/K/682:689 | No text annotation | ||
| IL_8RJC_023 | 1/K/481:482, 1/K/672:673 | Single bulged C | geometric IL_7KGA_004 IL_61258.15 | |
| IL_8RJC_024 | 1/K/482:485, 1/K/671:672 | Multiple bulged bases | geometric IL_1R3E_002 IL_84476.1 | |
| IL_8RJC_025 | 1/K/487:488, 1/K/665:669 | Major groove intercalation | geometric IL_1NBS_009 IL_82107.5 | |
| IL_8RJC_027 | 1/K/491:493, 1/K/661:662 | Single bulged U | geometric IL_4FRG_002 IL_89505.4 | |
| IL_8RJC_028 | 1/K/497:499, 1/K/656:657 | Single bulged C | geometric IL_5TBW_069 NA | |
| IL_8RJC_029 | 1/K/508:510, 1/K/649:650 | Single bulged A | geometric IL_6WPI_001 IL_31462.7 | |
| IL_8RJC_031 | 1/K/709:710, 1/K/1286:1288 | Single bulged G | geometric IL_4LFB_036 IL_00225.14 | |
| IL_8RJC_032 | 1/K/723:724, 1/K/942:945 | Multiple bulged bases | geometric IL_1R3E_001 IL_84476.1 | |
| IL_8RJC_033 | 1/K/727:731, 1/K/938:939 | No text annotation | ||
| IL_8RJC_034 | 1/K/732:735, 1/K/928:937 | No text annotation | ||
| IL_8RJC_035 | 1/K/737:739, 1/K/923:926 | No text annotation | geometric IL_5J7L_341 IL_42626.2 | |
| IL_8RJC_036 | 1/K/745:752, 1/K/911:919 | No text annotation | geometric IL_5TBW_020 NA | |
| IL_8RJC_037 | 1/K/980:982, 1/K/1273:1275 | Isolated non-canonical cWW pair | geometric IL_5TBW_110 NA | |
| IL_8RJC_038 | 1/K/1074:1076, 1/K/1234:1236 | Isolated non-canonical cWW pair | geometric IL_5UNE_003 IL_87907.2 | |
| IL_8RJC_039 | 1/K/1077:1080, 1/K/1219:1233 | No text annotation | ||
| IL_8RJC_040 | 1/K/1082:1084, 1/K/1213:1217 | Isolated cWS basepair | geometric IL_4TS2_003 NA | |
| IL_8RJC_041 | 1/K/1086:1087, 1/K/1209:1211 | Single bulged C | geometric IL_3SN2_001 IL_61258.15 | |
| IL_8RJC_042 | 1/K/1097:1099, 1/K/1196:1199 | Major groove platform with extra cWW | geometric IL_5D8H_003 IL_51387.3 | |
| IL_8RJC_043 | 1/K/1100:1168, 1/K/1193:1195 | Stack and bulge | geometric IL_2O3X_001 IL_31737.3 | |
| IL_8RJC_044 | 1/K/1173:1175, 1/K/1186:1188 | Isolated cWH basepair | geometric IL_3W3S_003 IL_10167.6 | |
| IL_8RJC_045 | 1/K/1357:1360, 1/K/1379:1382 | No text annotation | ||
| IL_8RJC_177 | 1/K/1357:1361, 1/K/1376:1382 | No text annotation | ||
| IL_8RJC_046 | 1/K/1360:1361, 1/K/1376:1379 | Multiple bulged bases | geometric IL_1R3E_002 IL_84476.1 | |
| IL_8RJC_047 | 1/K/1425:1429, 1/K/1455:1460 | Triple sheared related | geometric IL_4V9F_018 IL_97631.1 | |
| IL_8RJC_048 | 1/K/1431:1434, 1/K/1450:1453 | Double sheared | geometric IL_4LFB_060 IL_09705.15 | |
| IL_8RJC_049 | 1/K/1467:1468, 1/K/1496:1498 | Single bulged A | homologous IL_8C3A_026 NA | |
| IL_8RJC_050 | 1/K/1474:1476, 1/K/1489:1490 | Single stack bend | geometric IL_7A0S_005 IL_90729.1 | |
| IL_8RJC_051 | 1/K/1479:1480, 1/K/1484:1486 | Single bulged C | geometric IL_5J7L_311 IL_61258.15 | |
| IL_8RJC_052 | 1/K/1520:1522, 1/K/1655:1657 | Isolated non-canonical cWW pair | geometric IL_5TBW_027 NA | |
| IL_8RJC_053 | 1/K/1522:1526, 1/K/1648:1655 | tHW-tHW cross-strand stack | homologous IL_5TBW_028 NA | |
| IL_8RJC_054 | 1/K/1545:1546, 1/K/1612:1614 | Single bulged A | homologous IL_8C3A_031 NA | |
| IL_8RJC_055 | 1/K/1550:1551, 1/K/1576:1578 | Single bulged G | geometric IL_4V9F_026 IL_00225.14 | |
| IL_8RJC_056 | 1/K/1551:1555, 1/K/1572:1576 | Triple sheared | homologous IL_8C3A_033 NA | |
| IL_8RJC_057 | 1/K/1586:1589, 1/K/1605:1607 | Major groove platform with extra cWW | homologous IL_8C3A_034 NA | |
| IL_8RJC_058 | 1/K/1590:1592, 1/K/1603:1604 | Single bulged U | homologous IL_8C3A_035 NA | |
| IL_8RJC_059 | 1/K/1624:1626, 1/K/1636:1640 | No text annotation | homologous IL_8C3A_036 NA | |
| IL_8RJC_060 | 1/K/1671:1673, 1/K/1682:1684 | Isolated non-canonical cWW pair | homologous IL_8C3A_037 NA | |
| IL_8RJC_061 | 1/K/1686:1688, 1/K/1848:1851 | No text annotation | ||
| IL_8RJC_062 | 1/K/1694:1721, 1/K/1841:1842 | No text annotation | ||
| IL_8RJC_063 | 1/K/1723:1725, 1/K/1838:1839 | Single bulged G | homologous IL_8C3A_040 NA | |
| IL_8RJC_064 | 1/K/1732:1737, 1/K/1792:1797 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_7A0S_027 NA | |
| IL_8RJC_065 | 1/K/1737:1738, 1/K/1790:1792 | Minor groove platform | geometric IL_5TBW_039 NA | |
| IL_8RJC_066 | 1/K/1739:1744, 1/K/1786:1789 | C-loop with bulged stacked A's | homologous IL_8C3A_043 NA | |
| IL_8RJC_178 | 1/K/1746:1749, 1/K/1781:1784 | No text annotation | homologous IL_8C3A_481 NA | |
| IL_8RJC_068 | 1/K/1749:1751, 1/K/1779:1781 | Isolated non-canonical cWW pair | homologous IL_5TBW_042 NA | |
| IL_8RJC_069 | 1/K/1753:1757, 1/K/1775:1777 | No text annotation | geometric IL_7ELQ_002 IL_07785.1 | |
| IL_8RJC_070 | 1/K/1761:1763, 1/K/1769:1771 | Isolated non-canonical cWW pair | geometric IL_4AOB_005 IL_87907.2 | |
| IL_8RJC_071 | 1/K/1814:1816, 1/K/1823:1824 | Single bulged G | homologous IL_8C3A_048 NA | |
| IL_8RJC_072 | 1/K/1858:1860, 1/K/1874:1876 | Isolated non-canonical cWW pair | homologous IL_8C3A_049 NA | |
| IL_8RJC_074 | 1/K/1905:1909, 1/K/2067:2071 | UAA/GAN | homologous IL_8C3A_051 NA | |
| IL_8RJC_075 | 1/K/1911:1918, 1/K/2064:2065 | SSU/LSU pseudoknot | homologous IL_8C3A_052 NA | |
| IL_8RJC_076 | 1/K/1918:1920, 1/K/2063:2064 | No text annotation | ||
| IL_8RJC_077 | 1/K/1920:1922, 1/K/2062:2063 | No text annotation | ||
| IL_8RJC_078 | 1/K/1926:1933, 1/K/2053:2058 | No text annotation | geometric IL_5TBW_051 NA | |
| IL_8RJC_079 | 1/K/1933:1944, 1/K/2038:2053 | No text annotation | geometric IL_5TBW_052 NA | |
| IL_8RJC_080 | 1/K/1946:1948, 1/K/2035:2036 | Single bulged U | homologous IL_5TBW_053 NA | |
| IL_8RJC_081 | 1/K/1957:1965, 1/K/2023:2026 | No text annotation | ||
| IL_8RJC_082 | 1/K/1965:1968, 1/K/2018:2023 | No text annotation | ||
| IL_8RJC_083 | 1/K/1973:1978, 1/K/1989:1993 | No text annotation | ||
| IL_8RJC_084 | 1/K/2001:2005, 1/K/2014:2016 | Major groove platform with extra cWW | geometric IL_5D8H_003 IL_51387.3 | |
| IL_8RJC_085 | 1/K/2083:2085, 1/K/2272:2273 | Single bulged U | geometric IL_4LFB_046 IL_89505.4 | |
| IL_8RJC_086 | 1/K/2290:2292, 1/K/2342:2345 | Isolated cWS basepair | homologous IL_5TBW_057 NA | |
| IL_8RJC_087 | 1/K/2299:2301, 1/K/2334:2335 | Single bulged A | homologous IL_8C3A_062 NA | |
| IL_8RJC_088 | 1/K/2302:2309, 1/K/2329:2333 | Kink-turn | homologous IL_5TBW_059 NA | |
| IL_8RJC_089 | 1/K/2312:2314, 1/K/2325:2326 | Single bulged A | homologous IL_5TBW_060 NA | |
| IL_8RJC_090 | 1/K/2358:2364, 1/K/3858:3863 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_5TBW_061 NA | |
| IL_8RJC_091 | 1/K/2415:2419, 1/K/2427:2429 | C-loop | geometric IL_7A0S_047 IL_83150.2 | |
| IL_8RJC_092 | 1/K/2446:2450, 1/K/2509:2514 | UAA/GAN | homologous IL_8C3A_067 NA | |
| IL_8RJC_093 | 1/K/2477:2479, 1/K/2499:2500 | Single stack bend | geometric IL_7RQB_058 NA | |
| IL_8RJC_094 | 1/K/2542:2547, 1/K/2772:2774 | No text annotation | geometric IL_6DME_003 IL_55516.2 | |
| IL_8RJC_095 | 1/K/2549:2550, 1/K/2768:2770 | Single bulged U | geometric IL_2A64_002 IL_89505.4 | |
| IL_8RJC_096 | 1/K/2589:2593, 1/K/2752:2756 | Triple sheared | homologous IL_5TBW_067 NA | |
| IL_8RJC_097 | 1/K/2613:2614, 1/K/2724:2726 | Single bulged C | homologous IL_8C3A_075 NA | |
| IL_8RJC_098 | 1/K/2614:2615, 1/K/2722:2724 | Single stack bend | homologous IL_8C3A_076 NA | |
| IL_8RJC_099 | 1/K/2646:2648, 1/K/2685:2688 | Isolated tHS basepair with bulges | geometric IL_4V9F_076 IL_85599.2 | |
| IL_8RJC_100 | 1/K/2651:2653, 1/K/2681:2682 | Single bulged G | geometric IL_3NDB_004 IL_00225.14 | |
| IL_8RJC_101 | 1/K/2656:2662, 1/K/2672:2678 | Kink-turn | homologous IL_5TBW_073 NA | |
| IL_8RJC_102 | 1/K/2704:2705, 1/K/2710:2712 | No text annotation | ||
| IL_8RJC_103 | 1/K/2832:2838, 1/K/3850:3853 | No text annotation | homologous IL_5TBW_074 NA | |
| IL_8RJC_104 | 1/K/2844:2846, 1/K/3842:3844 | No text annotation | homologous IL_8C3A_081 NA | |
| IL_8RJC_105 | 1/K/2847:2850, 1/K/3840:3841 | Major groove platform; stack outside cWW | homologous IL_8C3A_082 NA | |
| IL_8RJC_179 | 1/K/2847:2855, 1/K/3837:3841 | No text annotation | homologous IL_8P9A_305 IL_22854.4 | |
| IL_8RJC_106 | 1/K/2850:2855, 1/K/3837:3840 | Intercalated tWH | geometric IL_5TBW_077 NA | |
| IL_8RJC_107 | 1/K/2867:2872, 1/K/2877:2883 | tSH-tSH-tHH-tHS | geometric IL_4V9F_063 IL_47346.2 | |
| IL_8RJC_108 | 1/K/2889:2891, 1/K/3610:3612 | Isolated non-canonical cWW pair | homologous IL_8C3A_085 NA | |
| IL_8RJC_109 | 1/K/2896:2897, 1/K/3602:3605 | No text annotation | homologous IL_8C3A_086 NA | |
| IL_8RJC_110 | 1/K/3632:3633, 1/K/3827:3829 | Single bulged A | homologous IL_8C3A_087 NA | |
| IL_8RJC_111 | 1/K/3660:3665, 1/K/3677:3684 | Kink-turn related | homologous IL_5TBW_083 NA | |
| IL_8RJC_112 | 1/K/3700:3703, 1/K/3749:3750 | No text annotation | homologous IL_8C3A_089 NA | |
| IL_8RJC_113 | 1/K/3704:3705, 1/K/3745:3748 | Major groove intercalation | homologous IL_5TBW_085 NA | |
| IL_8RJC_114 | 1/K/3708:3710, 1/K/3741:3742 | Single stack bend | homologous IL_8C3A_091 NA | |
| IL_8RJC_180 | 1/K/3708:3714, 1/K/3739:3742 | No text annotation | ||
| IL_8RJC_115 | 1/K/3710:3714, 1/K/3739:3741 | No text annotation | homologous IL_8C3A_092 NA | |
| IL_8RJC_116 | 1/K/3715:3721, 1/K/3732:3738 | No text annotation | homologous IL_8C3A_093 NA | |
| IL_8RJC_117 | 1/K/3780:3781, 1/K/3811:3814 | No text annotation | homologous IL_8C3A_094 NA | |
| IL_8RJC_118 | 1/K/3781:3792, 1/K/3808:3811 | No text annotation | geometric IL_5TBW_090 NA | |
| IL_8RJC_119 | 1/K/3895:3898, 1/K/4563:4565 | No text annotation | homologous IL_8C3A_096 NA | |
| IL_8RJC_120 | 1/K/3900:3902, 1/K/4558:4561 | No text annotation | homologous IL_8C3A_097 NA | |
| IL_8RJC_121 | 1/K/3913:3915, 1/K/4388:4389 | Single bulged U | homologous IL_5TBW_093 NA | |
| IL_8RJC_122 | 1/K/3916:3917, 1/K/4384:4387 | Minor groove platform | homologous IL_5TBW_094 NA | |
| IL_8RJC_123 | 1/K/3927:3929, 1/K/4181:4184 | No text annotation | homologous IL_8C3A_100 NA | |
| IL_8RJC_124 | 1/K/4082:4088, 1/K/4161:4164 | No text annotation | homologous IL_8C3A_106 NA | |
| IL_8RJC_125 | 1/K/4095:4100, 1/K/4108:4113 | No text annotation | geometric IL_5TBW_476 NA | |
| IL_8RJC_126 | 1/K/4191:4192, 1/K/4202:4204 | Single bulged A | homologous IL_8C3A_107 NA | |
| IL_8RJC_127 | 1/K/4243:4245, 1/K/4263:4267 | Isolated tHS basepair with bulges | geometric IL_5TBW_099 NA | |
| IL_8RJC_128 | 1/K/4291:4293, 1/K/4317:4318 | Single bulged A | geometric IL_5WWT_001 IL_31462.7 | |
| IL_8RJC_129 | 1/K/4295:4298, 1/K/4312:4315 | Tandem non-canonical cWW pairs | homologous IL_5TBW_100 NA | |
| IL_8RJC_130 | 1/K/4347:4350, 1/K/4364:4365 | Single stack bend | geometric IL_5J7L_032 IL_26793.1 | |
| IL_8RJC_131 | 1/K/4400:4401, 1/K/4442:4444 | Major groove platform | homologous IL_5TBW_102 NA | |
| IL_8RJC_181 | 1/K/4400:4403, 1/K/4440:4444 | No text annotation | homologous IL_8C3A_111 NA | |
| IL_8RJC_132 | 1/K/4401:4403, 1/K/4440:4442 | Isolated non-canonical cWW pair | geometric IL_5TBW_103 NA | |
| IL_8RJC_133 | 1/K/4403:4405, 1/K/4439:4440 | Major groove platform | geometric IL_5TBW_104 NA | |
| IL_8RJC_134 | 1/K/4405:4407, 1/K/4435:4439 | Major groove minor groove platform with extra cWW | homologous IL_5TBW_105 NA | |
| IL_8RJC_135 | 1/K/4412:4416, 1/K/4426:4430 | No text annotation | homologous IL_8C3A_114 NA | |
| IL_8RJC_136 | 1/K/4453:4454, 1/K/4526:4528 | Major groove platform | homologous IL_5TBW_107 NA | |
| IL_8RJC_137 | 1/K/4456:4458, 1/K/4520:4524 | No text annotation | homologous IL_8C3A_116 NA | |
| IL_8RJC_138 | 1/K/4458:4459, 1/K/4517:4520 | No text annotation | homologous IL_8C3A_117 NA | |
| IL_8RJC_139 | 1/K/4466:4468, 1/K/4489:4491 | Isolated non-canonical cWW pair | geometric IL_5TBW_110 NA | |
| IL_8RJC_182 | 1/K/4466:4470, 1/K/4485:4491 | No text annotation | ||
| IL_8RJC_140 | 1/K/4468:4470, 1/K/4485:4489 | No text annotation | geometric IL_3DD2_004 IL_55516.2 | |
| IL_8RJC_141 | 1/K/4495:4497, 1/K/4503:4505 | Isolated non-canonical cWW pair | homologous IL_8C3A_120 NA | |
| IL_8RJC_142 | 1/K/4537:4538, 1/K/4547:4549 | Single bulged A | geometric IL_7RQB_101 NA | |
| IL_8RJC_143 | 1/K/4580:4582, 1/K/4721:4723 | No text annotation | geometric IL_3ICQ_003 NA | |
| IL_8RJC_144 | 1/K/4582:4585, 1/K/4717:4721 | Double sheared | geometric IL_5TBW_114 NA | |
| IL_8RJC_145 | 1/K/4590:4592, 1/K/4618:4620 | Isolated non-canonical cWW pair | homologous IL_8C3A_124 NA | |
| IL_8RJC_146 | 1/K/4596:4603, 1/K/4608:4614 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8C3A_125 NA | |
| IL_8RJC_147 | 1/K/4624:4629, 1/K/4669:4673 | No text annotation | ||
| IL_8RJC_148 | 1/K/4632:4637, 1/K/4662:4666 | UAA/GAN related | homologous IL_8C3A_127 NA | |
| IL_8RJC_149 | 1/K/4638:4640, 1/K/4659:4661 | Isolated cWH basepair | geometric IL_3R1C_018 IL_10167.6 | |
| IL_8RJC_150 | 1/K/4641:4642, 1/K/4655:4658 | Multiple bulged bases | homologous IL_5TBW_119 NA | |
| IL_8RJC_151 | 1/K/4680:4685, 1/K/4705:4710 | UAA/GAN with extra cWW | geometric IL_5J7L_350 IL_49767.8 | |
| IL_8RJC_152 | 1/K/4739:4743, 1/K/4957:4960 | No text annotation | ||
| IL_8RJC_153 | 1/K/4743:4746, 1/K/4954:4957 | Tandem non-canonical cWW pairs | geometric IL_5TBW_100 NA | |
| IL_8RJC_154 | 1/K/4756:4766, 1/K/4868:4877 | No text annotation | homologous IL_8P9A_352 IL_42231.1 | |
| IL_8RJC_155 | 1/K/4769:4773, 1/K/4862:4865 | No text annotation | ||
| IL_8RJC_156 | 1/K/4885:4888, 1/K/4931:4934 | Tandem non-canonical cWW pairs | geometric IL_4K27_003 IL_77658.1 | |
| IL_8RJC_157 | 1/K/4890:4896, 1/K/4924:4929 | No text annotation | ||
| IL_8RJC_158 | 1/K/4898:4899, 1/K/4920:4922 | No text annotation | ||
| IL_8RJC_159 | 1/K/4972:4975, 1/K/4983:4986 | Tandem non-canonical cWW pairs | geometric IL_5TBW_129 NA | |
| IL_8RJC_160 | 1/K/4992:4994, 1/K/5057:5059 | Isolated non-canonical cWW pair | geometric IL_3D0U_006 IL_87907.2 | |
| IL_8RJC_161 | 1/K/4996:4997, 1/K/5053:5055 | No text annotation | ||
| IL_8RJC_162 | 1/K/5000:5002, 1/K/5045:5050 | Isolated non-canonical cWW pair | homologous IL_5TBW_132 NA | |
| IL_8RJC_163 | 1/K/5003:5009, 1/K/5039:5044 | No text annotation | ||
| IL_8RJC_164 | 1/K/5012:5014, 1/K/5035:5036 | Single bulged C | geometric IL_6ZDP_001 IL_61258.15 | |
| IL_8RJC_165 | 1/K/5014:5017, 1/K/5032:5035 | Double sheared; A in syn | homologous IL_8C3A_141 NA | |
| IL_8RJC_166 | 1/q/2:4, 1/q/69:71 | No text annotation | homologous IL_5EL4_357 NA | |
| IL_8RJC_167 | 1/u/15:16, 1/u/62:64 | Single bulged A | homologous IL_8C3A_143 NA | |
| IL_8RJC_168 | 1/u/21:27, 1/u/52:57 | Minor groove platform related | homologous IL_8C3A_144 NA | |
| IL_8RJC_169 | 1/u/28:29, 1/u/48:51 | Major groove minor groove platform; mini C-loop | homologous IL_7RQB_113 NA | |
| IL_8RJC_170 | 1/u/32:36, 1/u/41:45 | Symmetric double minor groove platform | geometric IL_7RQB_114 NA | |
| IL_8RJC_171 | 1/u/71:78, 1/u/98:104 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5TBW_377 NA | |
| IL_8RJC_172 | 1/u/79:81, 1/u/95:97 | Isolated non-canonical cWW pair | geometric IL_4Y1M_005 IL_07785.1 | |
| IL_8RJC_173 | 1/u/82:85, 1/u/92:94 | Isolated non-canonical cWW pair | homologous IL_8C3A_149 NA | |
| IL_8RJC_174 | 1/v/64:66, 1/v/92:95 | Isolated non-canonical cWW pair | homologous IL_5TBW_145 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_8RJC_026 | Isolated non-canonical cWW pair | ||
| IL_8RJC_030 | Isolated non-canonical cWW with bulges | ||
| IL_8RJC_176 | No text annotation | ||
| IL_8RJC_067 | No text annotation | ||
| IL_8RJC_073 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_8RJC_001 | 1/K/112:116, 1/K/155:160, 1/K/275:278 | No text annotation | ||
| J3_8RJC_014 | 1/K/196:199, 1/K/215:228, 1/K/240:244 | No text annotation | ||
| J3_8RJC_015 | 1/K/351:367, 1/K/374:379, 1/v/21:24 | No text annotation | homologous J3_8P9A_045 J3_30040.2 | |
| J3_8RJC_016 | 1/K/380:387, 1/K/414:415, 1/v/19:20 | No text annotation | geometric J3_4WF9_010 J3_60031.2 | |
| J3_8RJC_017 | 1/K/380:390, 1/K/401:415, 1/v/19:20 | No text annotation | homologous J3_8C3A_049 NA | |
| J3_8RJC_018 | 1/K/451:455, 1/K/701:705, 1/K/1292:1296 | No text annotation | ||
| J3_8RJC_019 | 1/K/980:984, 1/K/1070:1074, 1/K/1236:1275 | No text annotation | ||
| J3_8RJC_002 | 1/K/982:984, 1/K/1070:1074, 1/K/1236:1273 | No text annotation | ||
| J3_8RJC_003 | 1/K/1531:1537, 1/K/1622:1624, 1/K/1640:1643 | No text annotation | homologous J3_8C3A_003 NA | |
| J3_8RJC_004 | 1/K/1546:1548, 1/K/1580:1584, 1/K/1609:1612 | No text annotation | homologous J3_8C3A_004 NA | |
| J3_8RJC_020 | 1/K/1726:1727, 1/K/1802:1806, 1/K/1832:1837 | No text annotation | homologous J3_8P9A_051 J3_09667.1 | |
| J3_8RJC_005 | 1/K/1968:1972, 1/K/1994:2001, 1/K/2016:2018 | No text annotation | ||
| J3_8RJC_006 | 1/K/2393:2399, 1/K/2805:2807, 1/K/2819:2822 | No text annotation | homologous J3_5TBW_008 NA | |
| J3_8RJC_007 | 1/K/2402:2405, 1/K/2785:2791, 1/K/2800:2802 | No text annotation | homologous J3_8C3A_007 NA | |
| J3_8RJC_021 | 1/K/2440:2445, 1/K/2515:2519, 1/K/2536:2537 | No text annotation | homologous J3_8P9A_055 J3_31965.2 | |
| J3_8RJC_022 | 1/K/2451:2456, 1/K/2465:2476, 1/K/2501:2508 | No text annotation | ||
| J3_8RJC_008 | 1/K/2551:2555, 1/K/2572:2575, 1/K/2757:2767 | No text annotation | ||
| J3_8RJC_023 | 1/K/2575:2576, 1/K/2585:2589, 1/K/2756:2757 | No text annotation | homologous J3_8C3A_054 NA | |
| J3_8RJC_024 | 1/K/2598:2602, 1/K/2737:2738, 1/K/2742:2747 | No text annotation | homologous J3_8P9A_058 J3_12393.2 | |
| J3_8RJC_009 | 1/K/3937:3939, 1/K/4074:4078, 1/K/4168:4173 | No text annotation | ||
| J3_8RJC_010 | 1/K/4091:4094, 1/K/4114:4129, 1/K/4155:4158 | No text annotation | homologous J3_8P9A_060 J3_28639.1 | |
| J3_8RJC_025 | 1/K/4228:4230, 1/K/4331:4342, 1/K/4370:4375 | No text annotation | homologous J3_8C3A_056 NA | |
| J3_8RJC_011 | 1/K/4241:4243, 1/K/4267:4269, 1/K/4278:4283 | No text annotation | homologous J3_5TBW_013 NA | |
| J3_8RJC_012 | 1/K/4463:4466, 1/K/4491:4493, 1/K/4507:4513 | No text annotation | homologous J3_5TBW_014 NA | |
| J3_8RJC_026 | 1/K/4749:4754, 1/K/4879:4883, 1/K/4936:4951 | No text annotation | ||
| J3_8RJC_013 | 1/K/4970:4972, 1/K/4986:4991, 1/K/5060:5063 | No text annotation | ||
| J3_8RJC_027 | 1/u/9:14, 1/u/65:66, 1/u/109:110 | No text annotation | homologous J3_8P9A_066 J3_12003.2 | |
| J3_8RJC_028 | 1/v/44:45, 1/v/58:64, 1/v/95:99 | No text annotation | homologous J3_8C3A_060 NA | |
| J4_8RJC_001 | 1/K/111:112, 1/K/278:283, 1/K/304:310, 1/K/327:330 | No text annotation | homologous J4_8P9A_012 J4_45801.6 | |
| J4_8RJC_002 | 1/K/196:199, 1/K/215:222, 1/K/226:228, 1/K/240:244 | No text annotation | ||
| J4_8RJC_003 | 1/K/712:713, 1/K/955:961, 1/K/971:980, 1/K/1275:1284 | No text annotation | ||
| J4_8RJC_004 | 1/K/2365:2371, 1/K/2389:2391, 1/K/2824:2829, 1/K/3856:3857 | No text annotation | ||
| J4_8RJC_005 | 1/K/2406:2410, 1/K/2434:2439, 1/K/2538:2539, 1/K/2777:2784 | No text annotation | homologous J4_8C3A_004 NA | |
| J4_8RJC_006 | 1/K/2618:2619, 1/K/2637:2642, 1/K/2692:2698, 1/K/2718:2719 | No text annotation | ||
| J4_8RJC_007 | 1/K/3634:3638, 1/K/3650:3654, 1/K/3690:3694, 1/K/3821:3826 | No text annotation | homologous J4_8P9A_017 J4_07509.2 | |
| J4_8RJC_008 | 1/K/3696:3698, 1/K/3752:3753, 1/K/3771:3780, 1/K/3814:3819 | No text annotation | homologous J4_8C3A_007 NA | |
| J4_8RJC_009 | 1/K/4231:4235, 1/K/4289:4291, 1/K/4318:4319, 1/K/4328:4330 | No text annotation | ||
| J4_8RJC_010 | 1/K/4587:4590, 1/K/4620:4621, 1/K/4676:4678, 1/K/4712:4715 | No text annotation | ||
| J4_8RJC_011 | 1/q/7:10, 1/q/25:27, 1/q/43:49, 1/q/65:66 | No text annotation | homologous J4_8VU0_001 J4_70449.29 | |
| J5_8RJC_001 | 1/K/19:21, 1/v/35:42, 1/v/101:106, 1/v/113:114, 1/v/136:138 | No text annotation | homologous J5_8P9A_010 J5_01737.2 | |
| J5_8RJC_002 | 1/K/1335:1340, 1/K/1516:1519, 1/K/1658:1661, 1/K/2288:2290, 1/K/2345:2351 | No text annotation | homologous J5_8C3A_002 NA | |
| J5_8RJC_003 | 1/K/2855:2863, 1/K/2887:2888, 1/K/3613:3614, 1/K/3618:3626, 1/K/3835:3837 | No text annotation | homologous J5_8C3A_004 NA | |
| J5_8RJC_004 | 1/K/3903:3910, 1/K/4392:4400, 1/K/4444:4453, 1/K/4528:4534, 1/K/4552:4557 | No text annotation | ||
| J5_8RJC_005 | 1/K/3920:3923, 1/K/4188:4191, 1/K/4204:4205, 1/K/4227:4228, 1/K/4375:4381 | No text annotation | homologous J5_8P9A_015 J5_08912.1 | |
| J6_8RJC_001 | 1/K/21:26, 1/K/57:67, 1/K/74:78, 1/K/105:109, 1/K/332:339, 1/v/33:35 | No text annotation | ||
| J6_8RJC_002 | 1/K/1352:1355, 1/K/1384:1388, 1/K/1395:1399, 1/K/1418:1421, 1/K/1464:1466, 1/K/1499:1504 | No text annotation | ||
| J6_8RJC_003 | 1/K/3920:3923, 1/K/4188:4191, 1/K/4204:4205, 1/K/4227:4230, 1/K/4331:4342, 1/K/4370:4381 | No text annotation | ||
| J7_8RJC_001 | 1/K/1666:1671, 1/K/1684:1685, 1/K/1852:1855, 1/K/1879:1884, 1/K/1895:1899, 1/K/2077:2078, 1/K/2278:2283 | No text annotation |
Problematic loops
No problematic loops
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