HL_8RJC_032
3D structure
- PDB id
- 8RJC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.90061 Å
Loop
- Sequence
- CAGUCGGCAGAGCGAGAAAGAGAGUGGCGCGGACGCUACG
- Length
- 40 nucleotides
- Bulged bases
- 8RJC|1|K|C|2094, 8RJC|1|K|U|2267, 8RJC|1|K|C|2269
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8RJC|1|K|C|2087
8RJC|1|K|A|2088
8RJC|1|K|G|2089
8RJC|1|K|U|2090
8RJC|1|K|C|2091
8RJC|1|K|G|2092
8RJC|1|K|G|2093
8RJC|1|K|C|2094
8RJC|1|K|A|2095
8RJC|1|K|G|2096
8RJC|1|K|A|2097
8RJC|1|K|G|2098
8RJC|1|K|C|2099
8RJC|1|K|G|2100
8RJC|1|K|A|2101
8RJC|1|K|G|2102
8RJC|1|K|A|2103
8RJC|1|K|A|2104
8RJC|1|K|A|2105
8RJC|1|K|G|2106
8RJC|1|K|A|2107
8RJC|1|K|G|2108
8RJC|1|K|A|2109
8RJC|1|K|G|2110
8RJC|1|K|U|2111
8RJC|1|K|G|2112
8RJC|1|K|G|2113
8RJC|1|K|C|2258
8RJC|1|K|G|2259
8RJC|1|K|C|2260
8RJC|1|K|G|2261
8RJC|1|K|G|2262
8RJC|1|K|A|2263
8RJC|1|K|C|2264
8RJC|1|K|G|2265
8RJC|1|K|C|2266
8RJC|1|K|U|2267
8RJC|1|K|A|2268
8RJC|1|K|C|2269
8RJC|1|K|G|2270
Current chains
- Chain K
- 28S rRNA
Nearby chains
- Chain C
- Large ribosomal subunit protein uL4
- Chain E
- 60S ribosomal protein L6
- Chain F
- Ribosomal Protein uL30
- Chain Q
- Ribosomal protein L18
- Chain b
- 60S ribosomal protein L29
- Chain r
- 60S ribosomal protein L28
Coloring options: