3D structure

PDB id
8RJC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1
Experimental method
ELECTRON MICROSCOPY
Resolution
2.90061 Å

Loop

Sequence
ACGAGAACU
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8RJC_034 not in the Motif Atlas
Homologous match to HL_8C3A_031
Geometric discrepancy: 0.1261
The information below is about HL_8C3A_031
Detailed Annotation
T-loop with 2 stacked bulged bases
Broad Annotation
T-loop
Motif group
HL_43993.1
Basepair signature
cWW-tWH-F-F-F-F-F
Number of instances in this motif group
141

Unit IDs

8RJC|1|K|A|2376
8RJC|1|K|C|2377
8RJC|1|K|G|2378
8RJC|1|K|A|2379
8RJC|1|K|G|2380
8RJC|1|K|A|2381
8RJC|1|K|A|2382
8RJC|1|K|C|2383
8RJC|1|K|U|2384

Current chains

Chain K
28S rRNA

Nearby chains

Chain 4
Stress-associated endoplasmic reticulum protein
Chain P
uL22
Chain R
Ribosomal protein L19
Chain d
60S ribosomal protein L31

Coloring options:


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