HL_8RJC_035

3D structure

PDB id

8RJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.90061 Å

Loop

Sequence

AGCAGUU

Length

7 nucleotides

Bulged bases

8RJC|1|K|G|2421, 8RJC|1|K|U|2425

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RJC_035 not in the Motif Atlas

Homologous match to HL_5TBW_032

Geometric discrepancy: 0.2197

The information below is about HL_5TBW_032

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_40756.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

8RJC|1|K|A|2420
8RJC|1|K|G|2421
8RJC|1|K|C|2422
8RJC|1|K|A|2423
8RJC|1|K|G|2424
8RJC|1|K|U|2425
8RJC|1|K|U|2426

Current chains

Chain K

28S rRNA

Nearby chains

Chain P

uL22

Chain R

Ribosomal protein L19

Chain l

60S ribosomal protein L39-like