HL_8RJC_041

3D structure

PDB id

8RJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.90061 Å

Loop

Sequence

GUUCUCUUU

Length

9 nucleotides

Bulged bases

8RJC|1|K|U|2631

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RJC_041 not in the Motif Atlas

Homologous match to HL_8C3A_037

Geometric discrepancy: 0.1119

The information below is about HL_8C3A_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01927.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8RJC|1|K|G|2624
8RJC|1|K|U|2625
8RJC|1|K|U|2626
8RJC|1|K|C|2627
8RJC|1|K|U|2628
8RJC|1|K|C|2629
8RJC|1|K|U|2630
8RJC|1|K|U|2631
8RJC|1|K|U|2632

Current chains

Chain K

28S rRNA

Nearby chains

Chain 4

Stress-associated endoplasmic reticulum protein

Chain R

Ribosomal protein L19

Chain U

Ribosomal protein L22