HL_8RJC_056

3D structure

PDB id

8RJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.90061 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

8RJC|1|K|G|4195

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RJC_056 not in the Motif Atlas

Homologous match to HL_8C3A_055

Geometric discrepancy: 0.1181

The information below is about HL_8C3A_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

8RJC|1|K|C|4193
8RJC|1|K|U|4194
8RJC|1|K|G|4195
8RJC|1|K|G|4196
8RJC|1|K|G|4197
8RJC|1|K|G|4198
8RJC|1|K|C|4199
8RJC|1|K|G|4200
8RJC|1|K|G|4201

Current chains

Chain K

28S rRNA

Nearby chains

Chain I

60S ribosomal protein L10

Chain b

60S ribosomal protein L29

Chain q

Transfer RNA; tRNA