HL_8RJC_059
3D structure
- PDB id
- 8RJC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.90061 Å
Loop
- Sequence
- CAGAAGGG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8RJC_059 not in the Motif Atlas
- Homologous match to HL_8C3A_058
- Geometric discrepancy: 0.0961
- The information below is about HL_8C3A_058
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_93324.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 26
Unit IDs
8RJC|1|K|C|4270
8RJC|1|K|A|4271
8RJC|1|K|G|4272
8RJC|1|K|A|4273
8RJC|1|K|A|4274
8RJC|1|K|G|4275
8RJC|1|K|G|4276
8RJC|1|K|G|4277
Current chains
- Chain K
- 28S rRNA
Nearby chains
- Chain I
- 60S ribosomal protein L10
- Chain T
- 60S ribosomal protein L21
- Chain o
- 60S ribosomal protein L36a-like
- Chain q
- Transfer RNA; tRNA
Coloring options: