HL_8RJC_061

3D structure

PDB id

8RJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.90061 Å

Loop

Sequence

UGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RJC_061 not in the Motif Atlas

Homologous match to HL_5TBW_059

Geometric discrepancy: 0.0893

The information below is about HL_5TBW_059

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8RJC|1|K|U|4321
8RJC|1|K|G|4322
8RJC|1|K|A|4323
8RJC|1|K|A|4324
8RJC|1|K|A|4325
8RJC|1|K|G|4326

Current chains

Chain K

28S rRNA

Nearby chains

Chain D

Ribosomal_L18_c domain-containing protein

Chain T

60S ribosomal protein L21

Chain o

60S ribosomal protein L36a-like