3D structure

PDB id
8RJC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1
Experimental method
ELECTRON MICROSCOPY
Resolution
2.90061 Å

Loop

Sequence
UGAAAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8RJC_061 not in the Motif Atlas
Homologous match to HL_5TBW_059
Geometric discrepancy: 0.0893
The information below is about HL_5TBW_059
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.2
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
360

Unit IDs

8RJC|1|K|U|4321
8RJC|1|K|G|4322
8RJC|1|K|A|4323
8RJC|1|K|A|4324
8RJC|1|K|A|4325
8RJC|1|K|G|4326

Current chains

Chain K
28S rRNA

Nearby chains

Chain D
Ribosomal_L18_c domain-containing protein
Chain T
60S ribosomal protein L21
Chain o
60S ribosomal protein L36a-like

Coloring options:


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