HL_8RJC_071

3D structure

PDB id

8RJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.90061 Å

Loop

Sequence

GCCGGAAAGGGGGC

Length

14 nucleotides

Bulged bases

8RJC|1|K|G|4914

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RJC|1|K|G|4904
8RJC|1|K|C|4905
8RJC|1|K|C|4906
8RJC|1|K|G|4907
8RJC|1|K|G|4908
8RJC|1|K|A|4909
8RJC|1|K|A|4910
8RJC|1|K|A|4911
8RJC|1|K|G|4912
8RJC|1|K|G|4913
8RJC|1|K|G|4914
8RJC|1|K|G|4915
8RJC|1|K|G|4916
8RJC|1|K|C|4917

Current chains

Chain K

28S rRNA

Nearby chains

Chain M

60S ribosomal protein L14

Chain O

60S ribosomal protein L13

Chain w

Ribosomal protein L3