HL_8RJC_076
3D structure
- PDB id
- 8RJC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.90061 Å
Loop
- Sequence
- GUUCGAAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8RJC_076 not in the Motif Atlas
- Homologous match to HL_5HR6_003
- Geometric discrepancy: 0.1547
- The information below is about HL_5HR6_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.9
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
8RJC|1|q|G|53
8RJC|1|q|U|54
8RJC|1|q|U|55
8RJC|1|q|C|56
8RJC|1|q|G|57
8RJC|1|q|A|58
8RJC|1|q|A|59
8RJC|1|q|A|60
8RJC|1|q|C|61
Current chains
- Chain q
- P-site tRNA
Nearby chains
- Chain J
- 60S ribosomal protein L11
- Chain K
- Large subunit ribosomal RNA; LSU rRNA
- Chain o
- 60S ribosomal protein L36a-like
Coloring options: