HL_8RJC_078

3D structure

PDB id

8RJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.90061 Å

Loop

Sequence

GGAGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RJC_078 not in the Motif Atlas

Homologous match to HL_8C3A_074

Geometric discrepancy: 0.0574

The information below is about HL_8C3A_074

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

302

Unit IDs

8RJC|1|u|G|86
8RJC|1|u|G|87
8RJC|1|u|A|88
8RJC|1|u|G|89
8RJC|1|u|A|90
8RJC|1|u|C|91

Current chains

Chain u

5S rRNA

Nearby chains

Chain I

60S ribosomal protein L10

Chain K

Large subunit ribosomal RNA; LSU rRNA

Chain S

60S ribosomal protein L18a