HL_8RJD_030

3D structure

PDB id

8RJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78574 Å

Loop

Sequence

CAUGGAAGUCGG

Length

12 nucleotides

Bulged bases

8RJD|1|K|A|1984

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RJD_030 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3404

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8RJD|1|K|C|1978
8RJD|1|K|A|1979
8RJD|1|K|U|1980
8RJD|1|K|G|1981
8RJD|1|K|G|1982
8RJD|1|K|A|1983
8RJD|1|K|A|1984
8RJD|1|K|G|1985
8RJD|1|K|U|1986
8RJD|1|K|C|1987
8RJD|1|K|G|1988
8RJD|1|K|G|1989

Current chains

Chain K

28S rRNA

Nearby chains