HL_8RJD_064

3D structure

PDB id

8RJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78574 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

8RJD|1|K|G|4475

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RJD_064 not in the Motif Atlas

Homologous match to HL_5TBW_062

Geometric discrepancy: 0.0622

The information below is about HL_5TBW_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79150.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

8RJD|1|K|A|4474
8RJD|1|K|G|4475
8RJD|1|K|C|4476
8RJD|1|K|A|4477
8RJD|1|K|G|4478
8RJD|1|K|A|4479
8RJD|1|K|A|4480
8RJD|1|K|U|4481

Current chains

Chain K

28S rRNA

Nearby chains

Chain H

60S ribosomal protein L9

Chain m

eL40