HL_8RJD_074
3D structure
- PDB id
- 8RJD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.78574 Å
Loop
- Sequence
- GUAGCGGUUAUC
- Length
- 12 nucleotides
- Bulged bases
- 8RJD|1|q|C|16, 8RJD|1|q|G|18, 8RJD|1|q|G|19, 8RJD|1|q|U|20|||A
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8RJD_074 not in the Motif Atlas
- Homologous match to HL_6ORD_220
- Geometric discrepancy: 0.5451
- The information below is about HL_6ORD_220
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_96927.1
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
8RJD|1|q|G|12
8RJD|1|q|U|13
8RJD|1|q|A|14
8RJD|1|q|G|15
8RJD|1|q|C|16
8RJD|1|q|G|18
8RJD|1|q|G|19
8RJD|1|q|U|20
8RJD|1|q|U|20|||A
8RJD|1|q|A|21
8RJD|1|q|U|22
8RJD|1|q|C|23
Current chains
- Chain q
- P-site tRNA
Nearby chains
- Chain J
- 60S ribosomal protein L11
- Chain K
- Large subunit ribosomal RNA; LSU rRNA
- Chain o
- 60S ribosomal protein L36a-like
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