HL_8RJD_084
3D structure
- PDB id
- 8RJD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.78574 Å
Loop
- Sequence
- AUCUCGUCUGAUCU
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8RJD_084 not in the Motif Atlas
- Homologous match to HL_8C3A_228
- Geometric discrepancy: 0.1372
- The information below is about HL_8C3A_228
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50688.1
- Basepair signature
- cWW-cWS-F-tSW-F-tSH-tSH-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
8RJD|1|u|A|32
8RJD|1|u|U|33
8RJD|1|u|C|34
8RJD|1|u|U|35
8RJD|1|u|C|36
8RJD|1|u|G|37
8RJD|1|u|U|38
8RJD|1|u|C|39
8RJD|1|u|U|40
8RJD|1|u|G|41
8RJD|1|u|A|42
8RJD|1|u|U|43
8RJD|1|u|C|44
8RJD|1|u|U|45
Current chains
- Chain u
- 5S rRNA
Nearby chains
- Chain D
- Ribosomal_L18_c domain-containing protein
- Chain J
- 60S ribosomal protein L11
- Chain K
- Large subunit ribosomal RNA; LSU rRNA
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