HL_8RL2_007

3D structure

PDB id

8RL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human pre-60S - State 5

Experimental method

ELECTRON MICROSCOPY

Resolution

2.84 Å

Loop

Sequence

CUUGGGAAUG

Length

10 nucleotides

Bulged bases

8RL2|1|L5|G|294, 8RL2|1|L5|A|295, 8RL2|1|L5|A|296

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RL2_007 not in the Motif Atlas

Homologous match to HL_8C3A_008

Geometric discrepancy: 0.1546

The information below is about HL_8C3A_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

8RL2|1|L5|C|289
8RL2|1|L5|U|290
8RL2|1|L5|U|291
8RL2|1|L5|G|292
8RL2|1|L5|G|293
8RL2|1|L5|G|294
8RL2|1|L5|A|295
8RL2|1|L5|A|296
8RL2|1|L5|U|297
8RL2|1|L5|G|298

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LL

60S ribosomal protein L13

Chain LN

60S ribosomal protein L15

Chain La

60S ribosomal protein L27a