HL_8RL2_020

3D structure

PDB id

8RL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human pre-60S - State 5

Experimental method

ELECTRON MICROSCOPY

Resolution

2.84 Å

Loop

Sequence

GGAUGAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RL2_020 not in the Motif Atlas

Homologous match to HL_8C3A_026

Geometric discrepancy: 0.3081

The information below is about HL_8C3A_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_44398.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8RL2|1|L5|G|1886
8RL2|1|L5|G|1887
8RL2|1|L5|A|1888
8RL2|1|L5|U|1889
8RL2|1|L5|G|1890
8RL2|1|L5|A|1891
8RL2|1|L5|A|1892
8RL2|1|L5|C|1893

Current chains

Chain L5

28S rRNA

Nearby chains

Chain CC

Guanine nucleotide-binding protein-like 3

Chain Le

60S ribosomal protein L32

Chain Lf

60S ribosomal protein L35a