HL_8RL2_025
3D structure
- PDB id
- 8RL2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human pre-60S - State 5
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.84 Å
Loop
- Sequence
- AGCAGUU
- Length
- 7 nucleotides
- Bulged bases
- 8RL2|1|L5|G|2421, 8RL2|1|L5|U|2425
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8RL2_025 not in the Motif Atlas
- Homologous match to HL_8C3A_032
- Geometric discrepancy: 0.1434
- The information below is about HL_8C3A_032
- Detailed Annotation
- Pseudoknot geometry with 3' bulge
- Broad Annotation
- No text annotation
- Motif group
- HL_40756.1
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
8RL2|1|L5|A|2420
8RL2|1|L5|G|2421
8RL2|1|L5|C|2422
8RL2|1|L5|A|2423
8RL2|1|L5|G|2424
8RL2|1|L5|U|2425
8RL2|1|L5|U|2426
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain CD
- GTP-binding protein 4
- Chain LP
- 60S ribosomal protein L17
- Chain LR
- 60S ribosomal protein L19
- Chain Ll
- 60S ribosomal protein L39
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