HL_8RPY_047

3D structure

PDB id

8RPY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

GUAACUAUAAC

Length

11 nucleotides

Bulged bases

8RPY|1|A|A|1913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RPY_047 not in the Motif Atlas

Geometric match to HL_6VMY_004

Geometric discrepancy: 0.2877

The information below is about HL_6VMY_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

8RPY|1|A|G|1910
8RPY|1|A|U|1911
8RPY|1|A|A|1912
8RPY|1|A|A|1913
8RPY|1|A|C|1914
8RPY|1|A|U|1915
8RPY|1|A|A|1916
8RPY|1|A|U|1917
8RPY|1|A|A|1918
8RPY|1|A|A|1919
8RPY|1|A|C|1920

Current chains

Chain A

23S ribosomal RNA

Nearby chains