HL_8RPZ_010

3D structure

PDB id

8RPZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

8RPZ|1|A|G|329, 8RPZ|1|A|A|330, 8RPZ|1|A|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RPZ_010 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.0865

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

8RPZ|1|A|G|327
8RPZ|1|A|U|328
8RPZ|1|A|G|329
8RPZ|1|A|A|330
8RPZ|1|A|C|331
8RPZ|1|A|A|332
8RPZ|1|A|G|333
8RPZ|1|A|C|334
8RPZ|1|A|C|335

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

Large ribosomal subunit protein uL4

Chain U

Large ribosomal subunit protein uL24