HL_8RPZ_014

3D structure

PDB id

8RPZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

8RPZ|1|A|C|490

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RPZ_014 not in the Motif Atlas

Homologous match to HL_5J7L_148

Geometric discrepancy: 0.0883

The information below is about HL_5J7L_148

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

8RPZ|1|A|C|487
8RPZ|1|A|G|488
8RPZ|1|A|G|489
8RPZ|1|A|C|490
8RPZ|1|A|G|491
8RPZ|1|A|A|492
8RPZ|1|A|G|493

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain S

Large ribosomal subunit protein uL22

Chain y

Apidaecins type 88