HL_8RPZ_024

3D structure

PDB id

8RPZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

GUCACGAC

Length

8 nucleotides

Bulged bases

8RPZ|1|A|A|886, 8RPZ|1|A|C|890

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RPZ_024 not in the Motif Atlas

Geometric match to HL_4V90_032

Geometric discrepancy: 0.3501

The information below is about HL_4V90_032

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

8RPZ|1|A|G|883
8RPZ|1|A|U|884
8RPZ|1|A|C|885
8RPZ|1|A|A|886
8RPZ|1|A|C|890
8RPZ|1|A|G|891
8RPZ|1|A|A|892
8RPZ|1|A|C|893

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain F

Large ribosomal subunit protein uL5