HL_8RPZ_025

3D structure

PDB id

8RPZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

UGCUAACG

Length

8 nucleotides

Bulged bases

8RPZ|1|A|U|958, 8RPZ|1|A|C|961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RPZ_025 not in the Motif Atlas

Homologous match to HL_4WF9_027

Geometric discrepancy: 0.1005

The information below is about HL_4WF9_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

8RPZ|1|A|U|955
8RPZ|1|A|G|956
8RPZ|1|A|C|957
8RPZ|1|A|U|958
8RPZ|1|A|A|959
8RPZ|1|A|A|960
8RPZ|1|A|C|961
8RPZ|1|A|G|962

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain M

Large ribosomal subunit protein uL16