HL_8RPZ_046

3D structure

PDB id

8RPZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

8RPZ|1|A|C|1870

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RPZ_046 not in the Motif Atlas

Homologous match to HL_5J7L_180

Geometric discrepancy: 0.3554

The information below is about HL_5J7L_180

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

8RPZ|1|A|C|1868
8RPZ|1|A|G|1869
8RPZ|1|A|C|1870
8RPZ|1|A|A|1871
8RPZ|1|A|A|1872
8RPZ|1|A|G|1873

Current chains

Chain A

23S ribosomal RNA

Nearby chains