HL_8RPZ_048

3D structure

PDB id

8RPZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

8RPZ|1|A|U|1955

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RPZ_048 not in the Motif Atlas

Homologous match to HL_5J7L_182

Geometric discrepancy: 0.0942

The information below is about HL_5J7L_182

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

8RPZ|1|A|G|1949
8RPZ|1|A|G|1950
8RPZ|1|A|U|1951
8RPZ|1|A|A|1952
8RPZ|1|A|A|1953
8RPZ|1|A|G|1954
8RPZ|1|A|U|1955
8RPZ|1|A|U|1956
8RPZ|1|A|C|1957

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain K

Large ribosomal subunit protein uL14