HL_8RPZ_049
3D structure
- PDB id
- 8RPZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.44 Å
Loop
- Sequence
- GUGAAGAUGC
- Length
- 10 nucleotides
- Bulged bases
- 8RPZ|1|A|A|2030, 8RPZ|1|A|A|2031, 8RPZ|1|A|G|2032
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8RPZ_049 not in the Motif Atlas
- Homologous match to HL_4WF9_047
- Geometric discrepancy: 0.105
- The information below is about HL_4WF9_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_61996.2
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
8RPZ|1|A|G|2027
8RPZ|1|A|U|2028
8RPZ|1|A|G|2029
8RPZ|1|A|A|2030
8RPZ|1|A|A|2031
8RPZ|1|A|G|2032
8RPZ|1|A|A|2033
8RPZ|1|A|U|2034
8RPZ|1|A|G|2035
8RPZ|1|A|C|2036
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 0
- Large ribosomal subunit protein bL32
- Chain D
- Large ribosomal subunit protein uL3
- Chain R
- Large ribosomal subunit protein bL21
Coloring options: