HL_8RPZ_053

3D structure

PDB id

8RPZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

8RPZ|1|A|A|2268, 8RPZ|1|A|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RPZ_053 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.0701

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

8RPZ|1|A|C|2264
8RPZ|1|A|U|2265
8RPZ|1|A|A|2266
8RPZ|1|A|A|2267
8RPZ|1|A|A|2268
8RPZ|1|A|G|2269
8RPZ|1|A|A|2270
8RPZ|1|A|G|2271
8RPZ|1|A|U|2272
8RPZ|1|A|A|2273
8RPZ|1|A|A|2274
8RPZ|1|A|C|2275
8RPZ|1|A|G|2276

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain M

Large ribosomal subunit protein uL16

Chain W

Large ribosomal subunit protein bL27