HL_8RQ0_025

3D structure

PDB id

8RQ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

UGCUAACG

Length

8 nucleotides

Bulged bases

8RQ0|1|A|U|958, 8RQ0|1|A|C|961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RQ0_025 not in the Motif Atlas

Homologous match to HL_4WF9_027

Geometric discrepancy: 0.1005

The information below is about HL_4WF9_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

8RQ0|1|A|U|955
8RQ0|1|A|G|956
8RQ0|1|A|C|957
8RQ0|1|A|U|958
8RQ0|1|A|A|959
8RQ0|1|A|A|960
8RQ0|1|A|C|961
8RQ0|1|A|G|962

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain M

Large ribosomal subunit protein uL16