HL_8RQ0_031

3D structure

PDB id

8RQ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

GUGAAAAGC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RQ0_031 not in the Motif Atlas

Homologous match to HL_5J7L_165

Geometric discrepancy: 0.1003

The information below is about HL_5J7L_165

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

8RQ0|1|A|G|1281
8RQ0|1|A|U|1282
8RQ0|1|A|G|1283
8RQ0|1|A|A|1284
8RQ0|1|A|A|1285
8RQ0|1|A|A|1286
8RQ0|1|A|A|1287
8RQ0|1|A|G|1288
8RQ0|1|A|C|1289

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 0

Large ribosomal subunit protein bL32

Chain N

Large ribosomal subunit protein bL17

Chain S

Large ribosomal subunit protein uL22