HL_8RQ0_049

3D structure

PDB id

8RQ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

8RQ0|1|A|A|2030, 8RQ0|1|A|A|2031, 8RQ0|1|A|G|2032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RQ0_049 not in the Motif Atlas

Homologous match to HL_4WF9_047

Geometric discrepancy: 0.105

The information below is about HL_4WF9_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

10

Unit IDs

8RQ0|1|A|G|2027
8RQ0|1|A|U|2028
8RQ0|1|A|G|2029
8RQ0|1|A|A|2030
8RQ0|1|A|A|2031
8RQ0|1|A|G|2032
8RQ0|1|A|A|2033
8RQ0|1|A|U|2034
8RQ0|1|A|G|2035
8RQ0|1|A|C|2036

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 0

Large ribosomal subunit protein bL32

Chain D

Large ribosomal subunit protein uL3

Chain R

Large ribosomal subunit protein bL21