HL_8RQ0_072

3D structure

PDB id

8RQ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

GUCGGACAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RQ0_072 not in the Motif Atlas

Homologous match to HL_9DFE_198

Geometric discrepancy: 0.1792

The information below is about HL_9DFE_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02452.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

8

Unit IDs

8RQ0|1|A|G|2304
8RQ0|1|A|U|2305
8RQ0|1|A|C|2306
8RQ0|1|A|G|2307
8RQ0|1|A|G|2308
8RQ0|1|A|A|2309
8RQ0|1|A|C|2310
8RQ0|1|A|A|2311
8RQ0|1|A|U|2312

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain F

Large ribosomal subunit protein uL5