3D structure

PDB id
8RQ2 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation III
Experimental method
ELECTRON MICROSCOPY
Resolution
2.44 Å

Loop

Sequence
GGUAAGUUC
Length
9 nucleotides
Bulged bases
8RQ2|1|A|U|1955
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8RQ2_048 not in the Motif Atlas
Homologous match to HL_5J7L_182
Geometric discrepancy: 0.0942
The information below is about HL_5J7L_182
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_20167.2
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
10

Unit IDs

8RQ2|1|A|G|1949
8RQ2|1|A|G|1950
8RQ2|1|A|U|1951
8RQ2|1|A|A|1952
8RQ2|1|A|A|1953
8RQ2|1|A|G|1954
8RQ2|1|A|U|1955
8RQ2|1|A|U|1956
8RQ2|1|A|C|1957

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain K
Large ribosomal subunit protein uL14

Coloring options:


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