HL_8RRI_009

3D structure

PDB id

8RRI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with antibiotic tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GCGACAAAC

Length

9 nucleotides

Bulged bases

8RRI|1|A|A|1991, 8RRI|1|A|A|1994

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RRI_009 not in the Motif Atlas

Geometric match to HL_8P9A_133

Geometric discrepancy: 0.2548

The information below is about HL_8P9A_133

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_92598.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

8RRI|1|A|G|1988
8RRI|1|A|C|1989
8RRI|1|A|G|1990
8RRI|1|A|A|1991
8RRI|1|A|C|1992
8RRI|1|A|A|1993
8RRI|1|A|A|1994
8RRI|1|A|A|1995
8RRI|1|A|C|1996

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain 2

39S ribosomal protein L34, mitochondrial

Chain D

39S ribosomal protein L2, mitochondrial