HL_8RRI_024

3D structure

PDB id

8RRI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with antibiotic tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CUUAA(1MA)UAG

Length

9 nucleotides

Bulged bases

8RRI|1|A|U|2618

QA status

Modified nucleotides: 1MA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RRI_024 not in the Motif Atlas

Homologous match to HL_7A0S_048

Geometric discrepancy: 0.2355

The information below is about HL_7A0S_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61418.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

8RRI|1|A|C|2612
8RRI|1|A|U|2613
8RRI|1|A|U|2614
8RRI|1|A|A|2615
8RRI|1|A|A|2616
8RRI|1|A|1MA|2617
8RRI|1|A|U|2618
8RRI|1|A|A|2619
8RRI|1|A|G|2620

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain L

39S ribosomal protein L14, mitochondrial