HL_8RRI_036

3D structure

PDB id

8RRI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with antibiotic tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UCACAA

Length

6 nucleotides

Bulged bases

8RRI|1|A|C|3157

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RRI_036 not in the Motif Atlas

Geometric match to HL_6QCW_001

Geometric discrepancy: 0.1512

The information below is about HL_6QCW_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_49922.4

Basepair signature

cWW-F-F-F

Number of instances in this motif group

10

Unit IDs

8RRI|1|A|U|3154
8RRI|1|A|C|3155
8RRI|1|A|A|3156
8RRI|1|A|C|3157
8RRI|1|A|A|3158
8RRI|1|A|A|3159

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain E

39S ribosomal protein L3, mitochondrial

Chain L

39S ribosomal protein L14, mitochondrial

Chain O

39S ribosomal protein L17, mitochondrial

Chain Q

39S ribosomal protein L19, mitochondrial