HL_8RRI_052

3D structure

PDB id

8RRI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with antibiotic tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GAUAAACCCC

Length

10 nucleotides

Bulged bases

8RRI|1|AA|C|1225

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RRI_052 not in the Motif Atlas

Homologous match to HL_5J7L_021

Geometric discrepancy: 0.2422

The information below is about HL_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8RRI|1|AA|G|1217
8RRI|1|AA|A|1218
8RRI|1|AA|U|1219
8RRI|1|AA|A|1220
8RRI|1|AA|A|1221
8RRI|1|AA|A|1222
8RRI|1|AA|C|1223
8RRI|1|AA|C|1224
8RRI|1|AA|C|1225
8RRI|1|AA|C|1226

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain AG

28S ribosomal protein S9, mitochondrial

Chain AH

28S ribosomal protein S10, mitochondrial

Chain Ax

Transfer RNA; tRNA