HL_8RRI_060

3D structure

PDB id

8RRI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with antibiotic tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UAAAA

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RRI_060 not in the Motif Atlas

Homologous match to HL_5B63_003

Geometric discrepancy: 0.1315

The information below is about HL_5B63_003

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20490.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

13

Unit IDs

8RRI|1|Ax|U|13
8RRI|1|Ax|A|14
8RRI|1|Ax|A|15
8RRI|1|Ax|A|21
8RRI|1|Ax|A|22

Current chains

Chain Ax

P/P-tRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain q

Growth arrest and DNA damage-inducible proteins-interacting protein 1